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metagenomics
Hypocolypse
Field surveys, physiological analyses, & microbial communities during a marine hypoxic event.
Maggie D Johnson
,
Jarrod J Scott
,
Matthieu Leray
,
Noelle Lucey
,
Lucia Rodriguez
,
William Wied
,
Andrew H Altieri
Cite
Project Site
Data
GitHub
Interactive Data
Publication
Transisthmian Water Microbiomes
Assembly-based metagenomics of coral reef & mangrove water samples from both sides of the Isthmus of Panama.
Jarrod J Scott
,
Matthieu Leray
Coming Soon
Caribbean asphyxiation
Desperate brittlestars, suffocating corals and resilient microbes. A story by Beth King from STRI about our Bocas del Toro hypoxia study featuring
Jarrod Scott
&
Matt Leray
. Photo by Maggie Johnson.
Last updated on Jul 31, 2021
Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef
Complete bioinformatic workflows can be found on the Hypocolypse project website at
https://hypocolypse.github.io/
.
Maggie D Johnson
,
Jarrod J Scott
,
Matthieu Leray
,
Noelle Lucey
,
Lucia M Rodriguez Bravo
,
William L Wied
,
Andrew H Altieri
PDF
Cite
Project
Source Document
DOI
Open Access
What happens to marine life when oxygen is scarce?
A story by Kylee Denesha from Woods Hole Oceanographic Institution about our Bocas del Toro hypoxia study featuring
Jarrod Scott
. Photo by Maggie Johnson.
Last updated on Jul 31, 2021
Community-led, integrated, reproducible multi-omics with anvi’o
Big data abound in microbiology, but the workflows designed to enable researchers to interpret data can constrain the biological …
A Murat Eren
,
Evan Kiefl
,
Alon Shaiber
,
Iva Veseli
,
Samuel E Miller
,
Matthew S Schechter,
,
Isaac Fink
,
Jessica N Pan
,
Mahmoud Yousef
,
Emily C Fogarty
,
Florian Trigodet
,
Andrea R Watson
,
Özcan C Esen
,
Ryan M Moore
,
Quentin Clayssen
,
Michael D Lee
,
Veronika Kivenson
,
Elaina D Graham
,
Bryan D Merrill
,
Antti Karkman
,
Daniel Blankenberg
,
John M Eppley
,
Andreas Sjödin
,
Jarrod J Scott
,
Xabier Vázquez-Campos
,
Luke J McKay
,
Elizabeth A McDaniel
,
Sarah L R Stevens
,
Rika E Anderson
,
Jessika Fuessel
,
Antonio Fernandez-Guerra
,
Lois Maignien
,
Tom O Delmont
,
Amy D Willis
PDF
Cite
Project
Source Document
DOI
Open Access
Rethinking Diversity
A conceptual tour of the microbial world with an eye on genomics.
Jan 9, 2020 13:00 — 20:00
Bocas del Toro Field Station
Jarrod J Scott
Slides
Cite
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