metagenomics

Hypocolypse
Field surveys, physiological analyses, & microbial communities during a marine hypoxic event.
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Hypocolypse
Transisthmian Water Microbiomes
Assembly-based metagenomics of coral reef & mangrove water samples from both sides of the Isthmus of Panama.
Coming Soon
Transisthmian Water Microbiomes
Caribbean asphyxiation
Desperate brittlestars, suffocating corals and resilient microbes. A story by Beth King from STRI about the Bocas del Toro hypoxia study. Photo by Maggie Johnson.
29 Jul 2021
Caribbean asphyxiation
Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef
Loss of oxygen in the global ocean is accelerating due to climate change and eutrophication, but how acute deoxygenation events affect …
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What happens to marine life when oxygen is scarce?
A story by Kylee Denesha from Woods Hole Oceanographic Institution about the Bocas del Toro hypoxia study. Photo by Maggie Johnson.
26 Jul 2021
What happens to marine life when oxygen is scarce?
Community-led, integrated, reproducible multi-omics with anvi’o
Big data abound in microbiology, but the workflows designed to enable researchers to interpret data can constrain the biological …
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Rethinking Diversity
A conceptual tour of the microbial world with an eye on genomics.
9 Jan 2020
Slides
Rethinking Diversity